HHsearch alignment for GI: 254780724 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=2.3e-05 Score=56.07 Aligned_cols=101 Identities=24% Similarity=0.380 Sum_probs=68.2
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 22588489981888888899999983038767679996421312567875677874166665300018999987520599
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP 326 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P 326 (483)
T Consensus 592 ~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLiGaPPGYV----Gy~egG~Lte~vr~~P 667 (852)
T TIGR03346 592 NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYV----GYEEGGQLTEAVRRKP 667 (852)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHCCCCCCCC----CCCCCCEECHHHHHCC
T ss_conf 997458998678877689999999999855852069843044301224778558999767----7687874239898198
Q ss_pred -CEEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf -889965758--7999999-999873970
Q gi|254780724|r 327 -ERIILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 327 -D~IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
T Consensus 668 ysVvL~DEIEKAh~~V~~~lLQilD~G~l 696 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRL 696 (852)
T ss_pred CEEEEECCHHHHCHHHHHHHHHHHCCCEE
T ss_conf 87998530543076899999988236743