HHsearch alignment for GI: 254780724 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.14 E-value=0.00055 Score=46.49 Aligned_cols=46 Identities=30% Similarity=0.283 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 9998986225884899818888888999999830387676799964
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 481 l~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~idg 526 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred HCCHHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 1363118879978999805898788999985567589988799898