HHsearch alignment for GI: 254780724 and conserved domain: TIGR03597
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.33 E-value=0.011 Score=37.36 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 79899999999999980981243387787982376203453155357881688840576546678886506998899999
Q gi|254780724|r 163 RDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARL 242 (483)
Q Consensus 163 ~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~ 242 (483)
T Consensus 107 ~~~~~i~~wv~~~~~~~gl~~------~~--------V~lv---------------Sa~~g~gi~~l~~----------~ 147 (360)
T TIGR03597 107 VNLSKIKEWMKKRAKELGLKP------VD--------IILV---------------SAKKGNGIDELLD----------K 147 (360)
T ss_pred CCHHHHHHHHHHHHHHCCCCC------CC--------EEEE---------------ECCCCCCHHHHHH----------H
T ss_conf 787999999999999859983------66--------8999---------------6888989999999----------9
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89862258848998188888889999998303876767999
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
T Consensus 148 i~~~-~~~~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~ 187 (360)
T TIGR03597 148 IKKA-RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITT 187 (360)
T ss_pred HHHH-HCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9987-169958999168665899999998761677772364