HHsearch alignment for GI: 254780724 and conserved domain: cd00009

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27  E-value=0.0015  Score=43.48  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf             225884899818888888999999830387-676799964213125678756778741666653000-189999875205
Q gi|254780724|r  247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEI-TMRDLVKNCLRM  324 (483)
Q Consensus       247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~-t~~~ll~~aLR~  324 (483)
T Consensus        16 ~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~-~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~   83 (151)
T cd00009          16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS-DLLEGL--V---------VAELFGHFLVRLLFELAEKA   83 (151)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHH-HCCHHH--H---------HHHHHHHHHHHHHHHHHHHC
T ss_conf             87998089989999886599999999712137982785477-704677--7---------75760577889899999976


Q ss_pred             CCCEEEECCCCC
Q ss_conf             998899657587
Q gi|254780724|r  325 RPERIILGEVRG  336 (483)
Q Consensus       325 ~PD~IiVGEiRg  336 (483)
T Consensus        84 ~~~vl~iDEi~~   95 (151)
T cd00009          84 KPGVLFIDEIDS   95 (151)
T ss_pred             CCCEEEEECHHH
T ss_conf             998698201665