HHsearch alignment for GI: 254780724 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.0015 Score=43.48 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=43.8
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf 225884899818888888999999830387-676799964213125678756778741666653000-189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEI-TMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~-t~~~ll~~aLR~ 324 (483)
T Consensus 16 ~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~-~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~ 83 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS-DLLEGL--V---------VAELFGHFLVRLLFELAEKA 83 (151)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHH-HCCHHH--H---------HHHHHHHHHHHHHHHHHHHC
T ss_conf 87998089989999886599999999712137982785477-704677--7---------75760577889899999976
Q ss_pred CCCEEEECCCCC
Q ss_conf 998899657587
Q gi|254780724|r 325 RPERIILGEVRG 336 (483)
Q Consensus 325 ~PD~IiVGEiRg 336 (483)
T Consensus 84 ~~~vl~iDEi~~ 95 (151)
T cd00009 84 KPGVLFIDEIDS 95 (151)
T ss_pred CCCEEEEECHHH
T ss_conf 998698201665