HHsearch alignment for GI: 254780724 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00013 Score=50.94 Aligned_cols=110 Identities=21% Similarity=0.338 Sum_probs=67.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421--31256-7875677874166665300018999987
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
T Consensus 19 ~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~QL-----SgGqkqrv~iA~ 93 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQL-----SGGQRQRVALAR 93 (157)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCCCCC-----CHHHHHHHHHHH
T ss_conf 789879979999878899989999999588479962899999999979999999406087668-----869999999999
Q ss_pred HHHCCCCEEEECCCC---CHHH----HHHHHHH-HCCCCEEEHHHCC
Q ss_conf 520599889965758---7999----9999998-7397010200047
Q gi|254780724|r 321 CLRMRPERIILGEVR---GPEV----LDLLQAM-NTGHDGSMGTIHA 359 (483)
Q Consensus 321 aLR~~PD~IiVGEiR---g~Ea----~~~l~A~-~TGH~G~ltTlHa 359 (483)
T Consensus 94 al~~~p~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~t-ii~vtH~ 139 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRT-VIIVTHD 139 (157)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 997099999996987668999999999999999968999-9999089