HHsearch alignment for GI: 254780724 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.39 E-value=0.0099 Score=37.70 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHCCC--CCHHHHHHHHHHHCCCCCEEEECCCCCCHHH-HHHHHHHHCC-----CCCCEEEEECCHHHCCC
Q ss_conf 88865069--9889999989862258848998188888889-9999983038-----76767999642131256
Q gi|254780724|r 227 DHLVSFGA--VTAEGARLLQIIGRIRCNVLISGGTGSGKTT-LLNCLTRYID-----KDERIVTCEDTAELQLQ 292 (483)
Q Consensus 227 ~~l~~~g~--~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT-~L~al~~~i~-----~~~rivtIED~~El~l~ 292 (483)
T Consensus 12 ~~l~~~g~~~pt~IQ~~~ip~i-l~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Q 84 (203)
T cd00268 12 RGIYALGFEKPTPIQARAIPPL-LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 9999879999999999999999-779988997579972228888699999861667689669999687999999