HHsearch alignment for GI: 254780724 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=0.00037 Score=47.70 Aligned_cols=82 Identities=27% Similarity=0.261 Sum_probs=44.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHH-HCC---------CCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 48998188888889999998303-876767999--64213-125---------678756778741666653000189999
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAE-LQL---------QQPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~E-l~l---------~~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIV--FATADDPAAARLLSKAE 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE--ECCCCCCHHHHHHHHHH
T ss_conf 9899989999899999999999876399799998666448999999986224671307999--35999769999999999
Q ss_pred HHHHHCCCCEEEECCCC
Q ss_conf 87520599889965758
Q gi|254780724|r 319 KNCLRMRPERIILGEVR 335 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEiR 335 (483)
T Consensus 79 ~~~~~~~~vliiiDSit 95 (165)
T cd01120 79 RLRERGGDDLIILDELT 95 (165)
T ss_pred HHHHCCCCEEEEEECHH
T ss_conf 99986997799992889