HHsearch alignment for GI: 254780724 and conserved domain: cd01130

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=100.00  E-value=0  Score=375.37  Aligned_cols=183  Identities=57%  Similarity=0.832  Sum_probs=173.5

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC
Q ss_conf             78886506998899999898622588489981888888899999983038767679996421312567875677874166
Q gi|254780724|r  226 LDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN  305 (483)
Q Consensus       226 l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~  305 (483)
T Consensus         1 lddlv~~G~~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~   80 (186)
T cd01130           1 LDDLIAQGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGN   80 (186)
T ss_pred             CHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCC
T ss_conf             96788669999999999999998599899989999989999999996133456459841535404777756888860464


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             66530001899998752059988996575879999999998739701020004788888999999755304679998999
Q gi|254780724|r  306 IEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMV  385 (483)
Q Consensus       306 ~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~  385 (483)
T Consensus        81 ~~~~~~~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~--~~~~~~  158 (186)
T cd01130          81 VEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVP--LGRPLL  158 (186)
T ss_pred             CCCCCEECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCHHHH
T ss_conf             578650349999887366899737317568399999999997489860303158999999999998875479--999999


Q ss_pred             HHHHHHHCCEEEEEEECC--CCCEEEE
Q ss_conf             999974235889998769--9987899
Q gi|254780724|r  386 REIITSSLDVIVQTQRLR--DGSRRIT  410 (483)
Q Consensus       386 ~~~ia~avd~iV~~~r~~--dG~Rrv~  410 (483)
T Consensus       159 ~~~ia~~id~vV~~~~~~~~~~~~~v~  185 (186)
T cd01130         159 REQIKEAIDVIVHIARLKGRRGIRRVT  185 (186)
T ss_pred             HHHHHHHCCEEEEEEEECCCCCCEEEC
T ss_conf             999997577999998876999866738