HHsearch alignment for GI: 254780724 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=100.00 E-value=5.4e-33 Score=249.12 Aligned_cols=144 Identities=31% Similarity=0.499 Sum_probs=121.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8848998188888889999998303876--76799964213125678756778741666653000189999875205998
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPE 327 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD 327 (483)
T Consensus 1 ~GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~--e-~-g~~~~sf~~~lr~aLR~~PD 76 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQR--E-V-GLDTLSFENALKAALRQDPD 76 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEEC--C-C-CCCCCCHHHHHHHHHHHCCC
T ss_conf 938999899999799999999985363788369996473775236764488733--3-0-78863799999999854888
Q ss_pred EEEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 8996575879999-99999873970102000478888899999975530467999899999997423588999876
Q gi|254780724|r 328 RIILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 328 ~IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
T Consensus 77 vI~vGEiRd~et~~~al~aa~TGHl-V~sTlHa~sa~~ai~Rl~~~~~~----~~~~~~~~~la~~l~~vi~QrLv 147 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHL-VMSTLHTNSAAKTIDRIIDVFPA----EERDQIRTQLAESLKAVISQQLL 147 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 5752777899999999999971993-99976759899999999996888----67999999999999999422015