HHsearch alignment for GI: 254780724 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.40 E-value=0.0049 Score=39.80 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 20 sl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~I~~~G 61 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61 (236)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999989997399999999679878831899999