HHsearch alignment for GI: 254780724 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.72 E-value=5.4e-05 Score=53.53 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH-HCCCCCCEEEEEE------ECCCCCCCCCCHHHH
Q ss_conf 986225884899818888888999999830387676799964213-1256787567787------416666530001899
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE-LQLQQPHVVRLET------RPPNIEGEGEITMRD 316 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E-l~l~~~~~v~~~~------~~~~~e~~~~~t~~~ 316 (483)
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88988999999995899988999999869876998679976998799985646658875999963615467899999999
Q ss_pred HHHHHHHCCCCEEEECCCC---CHHHHH-HHHHHH
Q ss_conf 9987520599889965758---799999-999987
Q gi|254780724|r 317 LVKNCLRMRPERIILGEVR---GPEVLD-LLQAMN 347 (483)
Q Consensus 317 ll~~aLR~~PD~IiVGEiR---g~Ea~~-~l~A~~ 347 (483)
T Consensus 101 alARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~ 135 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999964999999758533289999999999999