>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.50 E-value=0.00088 Score=45.04 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=67.2 Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHC---CCCCCEEEEEEECCCCCC---------- Q ss_conf 98622588489981888888899999983038767679996421--312---567875677874166665---------- Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQ---LQQPHVVRLETRPPNIEG---------- 308 (483) Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~---l~~~~~v~~~~~~~~~e~---------- 308 (483) T Consensus 20 s~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~ 99 (178) T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178) T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCE T ss_conf 76988998999999999839999999985999996399999999988861024541775999269988998928996008 Q ss_pred --CCCCHHHHHHHHHHHCCCCEEEECCC---CCHHH----HHHHHHHH--CCCCEEEHHHC Q ss_conf --30001899998752059988996575---87999----99999987--39701020004 Q gi|254780724|r 309 --EGEITMRDLVKNCLRMRPERIILGEV---RGPEV----LDLLQAMN--TGHDGSMGTIH 358 (483) Q Consensus 309 --~~~~t~~~ll~~aLR~~PD~IiVGEi---Rg~Ea----~~~l~A~~--TGH~G~ltTlH 358 (483) T Consensus 100 ~LSGGq~QRvaIARAL~~~P~ill~DEPts~LD~~~~~~i~~~l~~l~~~~~~t-~i~vTH 159 (178) T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT-VVLVTH 159 (178) T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCE-EEEECC T ss_conf 177268899999999852999999708976479999999999999999964999-999989

HHsearch alignment for GI: 254780724 and conserved domain: cd03229