>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.59 E-value=0.0002 Score=49.59 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=67.2 Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HH----HC------CCCCCEEEEEEECCCCCCCCCC Q ss_conf 862258848998188888889999998303876767999642--13----12------5678756778741666653000 Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AE----LQ------LQQPHVVRLETRPPNIEGEGEI 312 (483) Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~E----l~------l~~~~~v~~~~~~~~~e~~~~~ 312 (483) T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~ 100 (173) T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173) T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHH T ss_conf 78879939999878997999999999768577878899999998868488865789995687667126778986339899 Q ss_pred HHHHHHHHHHHCCCCEEEECCC-CC--HHH----HHHHHH-HHCCCCEEEHHHCC Q ss_conf 1899998752059988996575-87--999----999999-87397010200047 Q gi|254780724|r 313 TMRDLVKNCLRMRPERIILGEV-RG--PEV----LDLLQA-MNTGHDGSMGTIHA 359 (483) Q Consensus 313 t~~~ll~~aLR~~PD~IiVGEi-Rg--~Ea----~~~l~A-~~TGH~G~ltTlHa 359 (483) T Consensus 101 kqrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~t-vi~~tH~ 154 (173) T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT-ILLSSHI 154 (173) T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECCC T ss_conf 99999999996499999990886579999999999999999968999-9999283

HHsearch alignment for GI: 254780724 and conserved domain: cd03230