HHsearch alignment for GI: 254780724 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00017 Score=50.02 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=50.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEE--CCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 98622588489981888888899999983038767---679996--4213125678756778741666653000189999
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE---RIVTCE--DTAELQLQQPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~---rivtIE--D~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~--q~~~~~~~ltv~e~l 104 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVS--EEDVHFPTLTVRETL 104 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEEC--CCCCCCCCCCHHHHH
T ss_conf 889809849999989999889999998378789875137999999994051486420199986--732237688099999
Q ss_pred HHHHHCCCCEEEECCCCCHHH
Q ss_conf 875205998899657587999
Q gi|254780724|r 319 KNCLRMRPERIILGEVRGPEV 339 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEiRg~Ea 339 (483)
T Consensus 105 ~~~~~~~~~~~~-~~LSgGqk 124 (202)
T cd03233 105 DFALRCKGNEFV-RGISGGER 124 (202)
T ss_pred HHHHHHCCCCCC-CCCCHHHH
T ss_conf 999984658744-45899999