HHsearch alignment for GI: 254780724 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.80  E-value=8.5e-05  Score=52.15  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHCC----------CCCCEEEEEEECCCCCCCCC
Q ss_conf             9862258848998188888889999998303876767999642--13125----------67875677874166665300
Q gi|254780724|r  244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQL----------QQPHVVRLETRPPNIEGEGE  311 (483)
Q Consensus       244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~l----------~~~~~v~~~~~~~~~e~~~~  311 (483)
T Consensus        22 ~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi-LSGG  100 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-LSGG  100 (173)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHC-CCHH
T ss_conf             999859999999999998099999999666667999899999993328998984208999088836777589976-7699


Q ss_pred             CHHHHHHHHHHHCCCCEEEECCCC---CHHHHH-H---HHHH-HCCCCEEEHHHC
Q ss_conf             018999987520599889965758---799999-9---9998-739701020004
Q gi|254780724|r  312 ITMRDLVKNCLRMRPERIILGEVR---GPEVLD-L---LQAM-NTGHDGSMGTIH  358 (483)
Q Consensus       312 ~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea~~-~---l~A~-~TGH~G~ltTlH  358 (483)
T Consensus       101 QkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~T-vi~vtH  154 (173)
T cd03246         101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT-RIVIAH  154 (173)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECC
T ss_conf             999999999982799999996876689989999999999978648989-999847