HHsearch alignment for GI: 254780724 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.78 E-value=0.00015 Score=50.44 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=64.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHC---------CCCCCEEEEEEECCCCC--CCC
Q ss_conf 9862258848998188888889999998303876767999642--1312---------56787567787416666--530
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQ---------LQQPHVVRLETRPPNIE--GEG 310 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~---------l~~~~~v~~~~~~~~~e--~~~ 310 (483)
T Consensus 22 ~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSg 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCH
T ss_conf 89986999999999998759999999986176678869999998899789999720898355636454199862888899
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCC---CHHHH----HHHHHHHCCCCEEEHHHC
Q ss_conf 0018999987520599889965758---79999----999998739701020004
Q gi|254780724|r 311 EITMRDLVKNCLRMRPERIILGEVR---GPEVL----DLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 311 ~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea~----~~l~A~~TGH~G~ltTlH 358 (483)
T Consensus 102 GqkqRv~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~T-vi~itH 155 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT-LIWITH 155 (178)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEEC
T ss_conf 999999999999649797672286556998999999999999839999-999805