HHsearch alignment for GI: 254780724 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00021 Score=49.37 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 22 nl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 63 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG 63 (234)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 899879999999989998299999999667667886899999