HHsearch alignment for GI: 254780724 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0018 Score=42.81 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 21 ~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g 61 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79889989999999997399999999759998970899999