HHsearch alignment for GI: 254780724 and conserved domain: cd03279
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.72 E-value=0.0014 Score=43.62 Aligned_cols=127 Identities=25% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHC----CCCCCE-------EEEECCHHHCCC---CCCEEEEEEECCCCCCCCCCH
Q ss_conf 258848998188888889999998303----876767-------999642131256---787567787416666530001
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYI----DKDERI-------VTCEDTAELQLQ---QPHVVRLETRPPNIEGEGEIT 313 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~ri-------vtIED~~El~l~---~~~~v~~~~~~~~~e~~~~~t 313 (483)
T Consensus 26 ~~~~lflI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~~~~~~~~~~ge~~aeV~feF~~g~~~Yr-V~R------~~gld 98 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYR-VER------SRGLD 98 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEE-EEE------CCCCC
T ss_conf 87888999889999788999999999838882336641000244567844999999997786889-986------27998
Q ss_pred HHHHHHH----------HHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCC-CCCH
Q ss_conf 8999987----------5205998899657587999999999873970102000478888899999975530467-9998
Q gi|254780724|r 314 MRDLVKN----------CLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGF-TLPS 382 (483)
Q Consensus 314 ~~~ll~~----------aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~-~~~~ 382 (483)
T Consensus 99 ~~qF~r~vlLpQG~F~~FL-~r~----~~~lSGgE~f~~slsla---l-als~~~q~-~~~--~~Le~lfidEGfgtld~ 166 (213)
T cd03279 99 YDQFTRIVLLPQGEFDRFL-ARP----VSTLSGGETFLASLSLA---L-ALSEVLQN-RGG--ARLEALFIDEGFGTLDP 166 (213)
T ss_pred HHHHHHEEEECCHHHHHHH-HCC----HHHCCHHHHHHHHHHHH---H-HHHHHHHH-HHH--HHHHHHHHHHHHHHCCH
T ss_conf 8893320175351079998-376----12105477877657899---9-99999998-516--67889988735754259
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999974235
Q gi|254780724|r 383 QMVREIITSSLD 394 (483)
Q Consensus 383 ~~~~~~ia~avd 394 (483)
T Consensus 167 e~le-~~~~~l~ 177 (213)
T cd03279 167 EALE-AVATALE 177 (213)
T ss_pred HHHH-HHHHHHH
T ss_conf 9999-9999999