HHsearch alignment for GI: 254780724 and conserved domain: cd03288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.27 E-value=0.00041 Score=47.35 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=36.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 41 nl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg 82 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG 82 (257)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 899879999999999998199999999605667888899998