HHsearch alignment for GI: 254780724 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.13  E-value=0.0015  Score=43.45  Aligned_cols=85  Identities=22%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCCCC---EEEEECCHHH---CCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             84899818888888999999830387676---7999642131---2567-875677874166665300018999987520
Q gi|254780724|r  251 CNVLISGGTGSGKTTLLNCLTRYIDKDER---IVTCEDTAEL---QLQQ-PHVVRLETRPPNIEGEGEITMRDLVKNCLR  323 (483)
Q Consensus       251 ~nilVsG~TGSGKTT~L~al~~~i~~~~r---ivtIED~~El---~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR  323 (483)
T Consensus         2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p~~pn-v~lwDlP--G~Gt~~f~~~~Yl~~~~~   78 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPN-VTLWDLP--GIGSTAFPPDDYLEEMKF   78 (197)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CEEECCC--CCCCCCCCHHHHHHHCCC
T ss_conf             1799955899868999999868898877758888874677862047999998-7697289--999876598999986585


Q ss_pred             CCCC-EEEECCCCCHH
Q ss_conf             5998-89965758799
Q gi|254780724|r  324 MRPE-RIILGEVRGPE  338 (483)
Q Consensus       324 ~~PD-~IiVGEiRg~E  338 (483)
T Consensus        79 ~~yD~fiiiss~rf~~   94 (197)
T cd04104          79 SEYDFFIIISSTRFSS   94 (197)
T ss_pred             CCCCEEEEEECCCCCH
T ss_conf             5457899983886414