HHsearch alignment for GI: 254780724 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.13 E-value=0.0015 Score=43.45 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=51.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCC---EEEEECCHHH---CCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 84899818888888999999830387676---7999642131---2567-875677874166665300018999987520
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDER---IVTCEDTAEL---QLQQ-PHVVRLETRPPNIEGEGEITMRDLVKNCLR 323 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~r---ivtIED~~El---~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR 323 (483)
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p~~pn-v~lwDlP--G~Gt~~f~~~~Yl~~~~~ 78 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPN-VTLWDLP--GIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CEEECCC--CCCCCCCCHHHHHHHCCC
T ss_conf 1799955899868999999868898877758888874677862047999998-7697289--999876598999986585
Q ss_pred CCCC-EEEECCCCCHH
Q ss_conf 5998-89965758799
Q gi|254780724|r 324 MRPE-RIILGEVRGPE 338 (483)
Q Consensus 324 ~~PD-~IiVGEiRg~E 338 (483)
T Consensus 79 ~~yD~fiiiss~rf~~ 94 (197)
T cd04104 79 SEYDFFIIISSTRFSS 94 (197)
T ss_pred CCCCEEEEEECCCCCH
T ss_conf 5457899983886414