HHsearch alignment for GI: 254780724 and conserved domain: pfam00265
>pfam00265 TK Thymidine kinase.
Probab=95.24 E-value=0.074 Score=31.61 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=52.5
Q ss_pred CEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCE
Q ss_conf 48998188888889999998-303876767999642131256787567787416666530--001899998752059988
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLT-RYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPER 328 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~-~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~ 328 (483)
T Consensus 3 L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~R~~-~~~i--~Sh~g~~~~~~~~~~~~~~~~~~~~~~~~dv 79 (175)
T pfam00265 3 IELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYG-TGKV--VTHDGISMEAKLIKTSLLDDIKDIISNTIHV 79 (175)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCEE--ECCCCCCCCCEECCCCHHHHHHHHHCCCCCE
T ss_conf 999992517789999999999999879939999461127789-9969--8899981145673653199999864368789
Q ss_pred EEECCCCC-HHHHHHH-HHHHCCCCEEEHHHCC
Q ss_conf 99657587-9999999-9987397010200047
Q gi|254780724|r 329 IILGEVRG-PEVLDLL-QAMNTGHDGSMGTIHA 359 (483)
Q Consensus 329 IiVGEiRg-~Ea~~~l-~A~~TGH~G~ltTlHa 359 (483)
T Consensus 80 I~IDEaQFf~~l~~~~~~~~~~~~~Viv~GLd~ 112 (175)
T pfam00265 80 VGIDEAQFFDDIVEFCETMANLGKIVIVAGLDG 112 (175)
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 998337752648999999996799499987503