HHsearch alignment for GI: 254780724 and conserved domain: pfam00265

>pfam00265 TK Thymidine kinase.
Probab=95.24  E-value=0.074  Score=31.61  Aligned_cols=105  Identities=17%  Similarity=0.100  Sum_probs=52.5

Q ss_pred             CEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCE
Q ss_conf             48998188888889999998-303876767999642131256787567787416666530--001899998752059988
Q gi|254780724|r  252 NVLISGGTGSGKTTLLNCLT-RYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPER  328 (483)
Q Consensus       252 nilVsG~TGSGKTT~L~al~-~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~  328 (483)
T Consensus         3 L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~R~~-~~~i--~Sh~g~~~~~~~~~~~~~~~~~~~~~~~~dv   79 (175)
T pfam00265         3 IELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYG-TGKV--VTHDGISMEAKLIKTSLLDDIKDIISNTIHV   79 (175)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCEE--ECCCCCCCCCEECCCCHHHHHHHHHCCCCCE
T ss_conf             999992517789999999999999879939999461127789-9969--8899981145673653199999864368789


Q ss_pred             EEECCCCC-HHHHHHH-HHHHCCCCEEEHHHCC
Q ss_conf             99657587-9999999-9987397010200047
Q gi|254780724|r  329 IILGEVRG-PEVLDLL-QAMNTGHDGSMGTIHA  359 (483)
Q Consensus       329 IiVGEiRg-~Ea~~~l-~A~~TGH~G~ltTlHa  359 (483)
T Consensus        80 I~IDEaQFf~~l~~~~~~~~~~~~~Viv~GLd~  112 (175)
T pfam00265        80 VGIDEAQFFDDIVEFCETMANLGKIVIVAGLDG  112 (175)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             998337752648999999996799499987503