HHsearch alignment for GI: 254780724 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=97.32 E-value=0.0071 Score=38.70 Aligned_cols=163 Identities=17% Similarity=0.254 Sum_probs=87.4
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCC-CC---CEEEECCCCCCHHHHHHHHHHHCC---CCCCEEEE--ECCHHHCC--
Q ss_conf 466788865069988999998986225-88---489981888888899999983038---76767999--64213125--
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRI-RC---NVLISGGTGSGKTTLLNCLTRYID---KDERIVTC--EDTAELQL-- 291 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~-~~---nilVsG~TGSGKTT~L~al~~~i~---~~~rivtI--ED~~El~l-- 291 (483)
T Consensus 4 ~~TFdnF~v-g~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~ 82 (219)
T pfam00308 4 RYTFENFVI-GSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDA 82 (219)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 987102023-6838999999999996758767826998899998889999999999984999828884399999988999
Q ss_pred -------------CCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HH---HHHHHCCCCE
Q ss_conf -------------678756778741666653--0001899998752059988996575879999-99---9998739701
Q gi|254780724|r 292 -------------QQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVL-DL---LQAMNTGHDG 352 (483)
Q Consensus 292 -------------~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~---l~A~~TGH~G 352 (483)
T Consensus 83 l~~~~~~~f~~~l~~~d~l~iD-Di~~l~~~~~~ee~lf~l~N~~-~~~~~~lllts~~~p~~l~~~~~dL~SRL~--~g 158 (219)
T pfam00308 83 LRDNKIEAFKKSYRNVDLLLID-DIQFLAGKEKTQEEFFHTFNAL-HENNKQIVLTSDRPPKELEGFEDRLRSRFE--WG 158 (219)
T ss_pred HHCCCHHHHHHHHHHCCHHHHC-CHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCHHHHHHHH--CC
T ss_conf 9818888999997632336522-3676568647899999999999-972986999779981002453277999986--87
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 020004788888999999755304679998999999974
Q gi|254780724|r 353 SMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITS 391 (483)
Q Consensus 353 ~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~ 391 (483)
T Consensus 159 ~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~-yl~~ 196 (219)
T pfam00308 159 LIIAIEPPDLETRLAILRKKAEEENINIPNEVLN-FIAQ 196 (219)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHH
T ss_conf 5661169999999999999999849999999999-9998