HHsearch alignment for GI: 254780724 and conserved domain: pfam00308

>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=97.32  E-value=0.0071  Score=38.70  Aligned_cols=163  Identities=17%  Similarity=0.254  Sum_probs=87.4

Q ss_pred             CCCHHHHHHCCCCCHHHHHHHHHHHCC-CC---CEEEECCCCCCHHHHHHHHHHHCC---CCCCEEEE--ECCHHHCC--
Q ss_conf             466788865069988999998986225-88---489981888888899999983038---76767999--64213125--
Q gi|254780724|r  223 KLTLDHLVSFGAVTAEGARLLQIIGRI-RC---NVLISGGTGSGKTTLLNCLTRYID---KDERIVTC--EDTAELQL--  291 (483)
Q Consensus       223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~-~~---nilVsG~TGSGKTT~L~al~~~i~---~~~rivtI--ED~~El~l--  291 (483)
T Consensus         4 ~~TFdnF~v-g~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~   82 (219)
T pfam00308         4 RYTFENFVI-GSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDA   82 (219)
T ss_pred             CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf             987102023-6838999999999996758767826998899998889999999999984999828884399999988999


Q ss_pred             -------------CCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HH---HHHHHCCCCE
Q ss_conf             -------------678756778741666653--0001899998752059988996575879999-99---9998739701
Q gi|254780724|r  292 -------------QQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVL-DL---LQAMNTGHDG  352 (483)
Q Consensus       292 -------------~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~---l~A~~TGH~G  352 (483)
T Consensus        83 l~~~~~~~f~~~l~~~d~l~iD-Di~~l~~~~~~ee~lf~l~N~~-~~~~~~lllts~~~p~~l~~~~~dL~SRL~--~g  158 (219)
T pfam00308        83 LRDNKIEAFKKSYRNVDLLLID-DIQFLAGKEKTQEEFFHTFNAL-HENNKQIVLTSDRPPKELEGFEDRLRSRFE--WG  158 (219)
T ss_pred             HHCCCHHHHHHHHHHCCHHHHC-CHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCHHHHHHHH--CC
T ss_conf             9818888999997632336522-3676568647899999999999-972986999779981002453277999986--87


Q ss_pred             EEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             020004788888999999755304679998999999974
Q gi|254780724|r  353 SMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITS  391 (483)
Q Consensus       353 ~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~  391 (483)
T Consensus       159 ~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~-yl~~  196 (219)
T pfam00308       159 LIIAIEPPDLETRLAILRKKAEEENINIPNEVLN-FIAQ  196 (219)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHH
T ss_conf             5661169999999999999999849999999999-9998