HHsearch alignment for GI: 254780724 and conserved domain: pfam04665
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=96.06 E-value=0.0079 Score=38.39 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH---HHC-CCCCCEEEEEEECCCCCCCCCCH---HHHHH
Q ss_conf 622588489981888888899999983038767679996421---312-56787567787416666530001---89999
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA---ELQ-LQQPHVVRLETRPPNIEGEGEIT---MRDLV 318 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~---El~-l~~~~~v~~~~~~~~~e~~~~~t---~~~ll 318 (483)
T Consensus 9 Ll~~pFrmaivGgSGSGKT~yLlsLf~tlv~kykhIfLfTpv~N~~Yd~YVwPdHV~~vtt~eeleY~L~~~k~kIek~~ 88 (241)
T pfam04665 9 LLAAPFRMAIVGGSGSGKTTYLLSLLRTLVRKFKHIFLFTPVYNNAYDGYVWPDHIFKVTTNEELEYALSKTKEKIEKFS 88 (241)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 74087359998158875669999999999774158999624467323652577732562572357789999999999999
Q ss_pred HHHHHCCC---CEEEECCCCCHHHH--HHHHHHHCCCCEEEHHH-------CCC-CHHHHHH----------HHHHHHHH
Q ss_conf 87520599---88996575879999--99999873970102000-------478-8888999----------99975530
Q gi|254780724|r 319 KNCLRMRP---ERIILGEVRGPEVL--DLLQAMNTGHDGSMGTI-------HAN-NARESFG----------RMEAMIAM 375 (483)
Q Consensus 319 ~~aLR~~P---D~IiVGEiRg~Ea~--~~l~A~~TGH~G~ltTl-------Ha~-s~~~ai~----------RL~~m~~~ 375 (483)
T Consensus 89 ~~~~~~k~~~~fLiIlDD~Gd~q~rs~~L~~f~N~gRH~n~Sii~Lcqty~Hvp~n~R~Sith~cccNvs~sD~enil-- 166 (241)
T pfam04665 89 KKASNQKENFRFLIILDDLGDMQTRSKTLLNFTNHGRHLNISIILLCQTYKHVPVNGRDSITHFCCCNVSDSDLENIL-- 166 (241)
T ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHH--
T ss_conf 860266641048999625553233115777664016101011134442211049987432048998315466687644--
Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEEECC
Q ss_conf 4679998999999974235889998769998789999999841498
Q gi|254780724|r 376 GGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEGN 421 (483)
Q Consensus 376 ~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~e~~ 421 (483)
T Consensus 167 --rsmsi~~~Kk~ll~~v~i~r~~----~~kr~v~-IIedsVf~~g 205 (241)
T pfam04665 167 --RSMSIRGSKKLLLRAVNIMRSA----EKKRRVY-IIEDSVFCEG 205 (241)
T ss_pred --HCCCCCCCHHHHHHHHHHHHHH----HCCCEEE-EEEECCCCCC
T ss_conf --1376301178899999999866----1384599-9970112478