HHsearch alignment for GI: 254780724 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=97.05 E-value=0.0073 Score=38.63 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=71.7
Q ss_pred HHHHCCCCCHH---HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEECCH---HHCCCC-CCEE
Q ss_conf 88650699889---9999898622588489981888888899999983038767---679996421---312567-8756
Q gi|254780724|r 228 HLVSFGAVTAE---GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE---RIVTCEDTA---ELQLQQ-PHVV 297 (483)
Q Consensus 228 ~l~~~g~~~~~---~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~---rivtIED~~---El~l~~-~~~v 297 (483)
T Consensus 10 ~al~~g~l~~a~s~I~e~L~~~~~~~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~~Y~hp~~pnV~ 89 (375)
T pfam05049 10 TALREGNLQKVVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRTPYSHPHFPNVV 89 (375)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 99965998999999999997544382479985489986789999874789877776876876632675567899999807
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCH--HHHHHHHHHHCCC
Q ss_conf 778741666653000189999875205998-8996575879--9999999987397
Q gi|254780724|r 298 RLETRPPNIEGEGEITMRDLVKNCLRMRPE-RIILGEVRGP--EVLDLLQAMNTGH 350 (483)
Q Consensus 298 ~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD-~IiVGEiRg~--Ea~~~l~A~~TGH 350 (483)
T Consensus 90 -lwDLPG--~gt~~f~~~~Yl~~~~f~~yDfFiiiss~rf~~n~v~LAk~i~~mgK 142 (375)
T pfam05049 90 -LWDLPG--LGATNFTVETYLEEMKFSEYDFFIIISSERFSLNDVKLAKAIQRMGK 142 (375)
T ss_pred -EECCCC--CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf -962899--99899898999987485647789999677543201899999998389