HHsearch alignment for GI: 254780724 and conserved domain: pfam06431
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=95.45 E-value=0.025 Score=34.94 Aligned_cols=41 Identities=27% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 98899999898622---588489981888888899999983038
Q gi|254780724|r 235 VTAEGARLLQIIGR---IRCNVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 235 ~~~~~~~~l~~~v~---~~~nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
T Consensus 137 ~~~~i~~~lk~~v~N~PKkRy~lFkGPvNsGKTTlAAAlldLcg 180 (417)
T pfam06431 137 MDSVIYDFLKCIVYNIPKKRYWLFKGPIDSGKTTLAAALLDLCG 180 (417)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 27999999999961887411588767867774879999998636