HHsearch alignment for GI: 254780724 and conserved domain: pfam07728

>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=96.21  E-value=0.017  Score=36.02  Aligned_cols=88  Identities=27%  Similarity=0.409  Sum_probs=44.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHCCC-C-CCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf             4899818888888999999830387-6-7679996421312567875677874166665300018999987520599889
Q gi|254780724|r  252 NVLISGGTGSGKTTLLNCLTRYIDK-D-ERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERI  329 (483)
Q Consensus       252 nilVsG~TGSGKTT~L~al~~~i~~-~-~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~I  329 (483)
T Consensus         1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~--------~~~~~~~~~g~l~~-a~~-~g~vl   70 (139)
T pfam07728         1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNI--------ANGTTSWVDGPLVR-AAR-EGEIA   70 (139)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEEC--------CCCCEEEECCHHHC-CCC-CCCEE
T ss_conf             989998997569999999999807983111214655652220573423--------79935781551410-101-28689


Q ss_pred             EECCCC--CHHHHH-HHHHHHCC
Q ss_conf             965758--799999-99998739
Q gi|254780724|r  330 ILGEVR--GPEVLD-LLQAMNTG  349 (483)
Q Consensus       330 iVGEiR--g~Ea~~-~l~A~~TG  349 (483)
T Consensus        71 ~lDEin~a~~~v~~~L~~~le~~   93 (139)
T pfam07728        71 VLDEINRANPDVLNSLLSLLDER   93 (139)
T ss_pred             EECCHHHCCHHHHHHHHHHHCCC
T ss_conf             96343448999999999997489