HHsearch alignment for GI: 254780724 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Probab=97.75  E-value=6.4e-05  Score=52.98  Aligned_cols=86  Identities=27%  Similarity=0.375  Sum_probs=51.5

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEEECCH--HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             88489981888888899999983038767-679996421--312567875677874166665300018999987520599
Q gi|254780724|r  250 RCNVLISGGTGSGKTTLLNCLTRYIDKDE-RIVTCEDTA--ELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP  326 (483)
Q Consensus       250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~-rivtIED~~--El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P  326 (483)
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKP   79 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9789999999702999999999872668996899875998988898765--30001122105199999999999984499


Q ss_pred             CEEEECCCCCH
Q ss_conf             88996575879
Q gi|254780724|r  327 ERIILGEVRGP  337 (483)
Q Consensus       327 D~IiVGEiRg~  337 (483)
T Consensus        80 ~viiiDei~~~   90 (148)
T smart00382       80 DVLILDEITSL   90 (148)
T ss_pred             CEEEEECCHHH
T ss_conf             89998275021