RPSBLAST alignment for GI: 254780724 and conserved domain: cd01130
>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.. Length = 186
Score = 248 bits (635), Expect = 2e-66
Identities = 105/187 (56%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 226 LDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285
LD L++ G + A L + R N+LISGGTGSGKTTLLN L +I DERI+T ED
Sbjct: 1 LDDLIAQGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60
Query: 286 TAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQA 345
TAELQL P+ VRL TRP N+EG GE+TM DL+++ LRMRP+RII+GEVRG E LDLLQA
Sbjct: 61 TAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQA 120
Query: 346 MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL--R 403
MNTGH G M TIHAN+A E+ R+E + + P ++RE I ++DVIV RL R
Sbjct: 121 MNTGHPGGMTTIHANSAEEALTRLELLPSNVPLGRP--LLREQIKEAIDVIVHIARLKGR 178
Query: 404 DGSRRIT 410
G RR+T
Sbjct: 179 RGIRRVT 185