BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] (483 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/483 (100%), Positives = 483/483 (100%) Query: 1 MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE 60 MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE Sbjct: 1 MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE 60 Query: 61 VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND 120 VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND Sbjct: 61 VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND 120 Query: 121 ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG 180 ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG Sbjct: 121 ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG 180 Query: 181 RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA 240 RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA Sbjct: 181 RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA 240 Query: 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE 300 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE Sbjct: 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE 300 Query: 301 TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN 360 TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN Sbjct: 301 TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN 360 Query: 361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG 420 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG Sbjct: 361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG 420 Query: 421 NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS 480 NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS Sbjct: 421 NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS 480 Query: 481 RAL 483 RAL Sbjct: 481 RAL 483 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 30.0 bits (66), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGE 311 + + G TG GKT L+ L R + DE + D +E +++ V RL PP G E Sbjct: 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY-MEKHSVSRLIGSPPGYVGYEE 658 Query: 312 ITMRDLVKNCLRMRPERIIL 331 + +R P +++L Sbjct: 659 ---GGALTEAVRRHPYQVVL 675 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Query: 253 VLISGGTGSGKTTLLNCLTRYIDKDE 278 V+I+G +GSGK+TL+ C+ +I+K + Sbjct: 46 VIIAGPSGSGKSTLIRCIN-HIEKHQ 70 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 16/26 (61%) Query: 250 RCNVLISGGTGSGKTTLLNCLTRYID 275 + N+L+ G TG GKT L L R ID Sbjct: 113 KSNILLVGPTGCGKTYLAQTLARIID 138 >gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 28.5 bits (62), Expect = 0.23, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 114 FEDLCNDILGYGPLQPLIAR 133 EDLC I +G +QPLI R Sbjct: 63 LEDLCQSIKSHGIIQPLIVR 82 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 28.1 bits (61), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%) Query: 257 GGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPH-------VVRLETR 302 G +G GK+T L CL R +E I C T E+ L + VVRL R Sbjct: 39 GPSGCGKSTFLRCLNRM---NETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHV 296 + I G GSGK+TL+N L +Y ++ ++ E + +Q + P Sbjct: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEA 546 Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 16/134 (11%) Query: 201 NVIIPPLALDGPTLTIRKF----KKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNV--- 253 NV I L LD T +I F K+D L ++ R R NV Sbjct: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 Query: 254 ---------LISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPP 304 L +G S + LL+ +R++ + + I+ E +++ + + T P Sbjct: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 Query: 305 NIEGEGEITMRDLV 318 +EGE DLV Sbjct: 460 FVEGEPSQEFLDLV 473 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 315 RDLVKNCLRMRPERIILGEV--RGPEVLDLLQAMNTGHDGSMGTIHANNARE 364 +D V + L++ PE I G V +GP + +L M+ G SMG + A+N E Sbjct: 408 QDGVTDVLKLVPEGI-EGRVPYKGP-IASVLHQMSGGLKSSMGYVGASNIEE 457 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 254 LISGGTGSGKTTLLNCL 270 ++SG TGSGK+ LL+ L Sbjct: 25 ILSGDTGSGKSILLDAL 41 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 16/28 (57%) Query: 255 ISGGTGSGKTTLLNCLTRYIDKDERIVT 282 I G G+GKTTLL LT I D +T Sbjct: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFIT 342 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 217 RKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCL 270 R F+K++ D ++ G + EG ++ + R+ ++LI+G TGSGK+ +N + Sbjct: 425 RVFEKNQC--DLAINLGK-SIEGKPIIADLARMP-HLLIAGTTGSGKSVAINTM 474 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 257 GGTGSGKTTLLNCLTRYID 275 G +GSGK+T++N L R D Sbjct: 386 GPSGSGKSTIINLLMRMYD 404 >gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 54 RTPHYYEVKSTIFTTLIEMID 74 R PHY +++ F +IE ID Sbjct: 351 RFPHYADIREKKFKAIIEKID 371 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 252 NVLISGGTGSGKTTLLNCL 270 ++L++G TGSGK+ +N + Sbjct: 414 HILVAGTTGSGKSVAINTM 432 >gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Length = 578 Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 139 IMVNGSNKVFIEVNGKTVETGINFRDNEQL 168 ++V S K + GKT +T F+DN+ L Sbjct: 92 VVVRSSTKWSPALFGKTYKTPYTFKDNKSL 121 >537021.9.peg.472_1 Length = 369 Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 247 GRIRCNVLISGGTGSGKTTLLNCLTR 272 GRI + ++SG G GKTT + R Sbjct: 18 GRIAQSYMLSGTRGIGKTTTARIIAR 43 >gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289 R L I R+ + +SG GSGK+ L + R++ D+ + T L Sbjct: 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL 72 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 291,285 Number of Sequences: 1233 Number of extensions: 12050 Number of successful extensions: 78 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 25 length of query: 483 length of database: 328,796 effective HSP length: 77 effective length of query: 406 effective length of database: 233,855 effective search space: 94945130 effective search space used: 94945130 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)