HHsearch alignment for GI: 254780725 and conserved domain: COG0455
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].
Probab=100.00 E-value=3.6e-39 Score=260.00 Aligned_cols=258 Identities=21% Similarity=0.301 Sum_probs=222.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCC-HHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 537999746988775689999999999626994999978798986033438998789-8886318456124337653202
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINS-ISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~-l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~D-----i~~~ 76 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIED-----IIYE 76 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHH-----EEEE
T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768-----0231
Q ss_pred CC-CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 48-98068724876120320799999998999851288899738888898999998620125435787768899999999
Q gi|254780725|r 240 YA-ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLI 318 (427)
Q Consensus 240 ~~-~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll 318 (427)
T Consensus 77 ~~~~gl~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 77 TPQDGLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
T ss_conf 57689899607887688861698889999999875299999968999668889998736817999279852089999999
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99998198767538999565898752-00599999984895379906879999998847961898889998999999999
Q gi|254780725|r 319 DVLKKLRPADKPPYLVLNQVKTPKKP-EISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFS 397 (427)
Q Consensus 319 ~~l~~~~~~~~~~~iVlNr~~~~~~~-~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La 397 (427)
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-~v~~a~~~g~p~~~~~p~s~as~ai~~lA 235 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP-EVRRALAEGKPIVLYSPNSKASQAIKELA 235 (262)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99997387643315899703666654678999999997077434715675-78998624986797288978999999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 998522122321110589999874234
Q gi|254780725|r 398 RVLMGRVTVSKPQSAMYTKIKKIFNMK 424 (427)
Q Consensus 398 ~~i~gr~~~~~~k~~~~~~l~~lf~rk 424 (427)
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ 262 (262)
T COG0455 236 AKLAGLPEPKAPRRGFISKIKRLLKRR 262 (262)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 998605566774311279999885069