HHsearch alignment for GI: 254780725 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.95 E-value=0.00011 Score=48.09 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=105.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
T Consensus 139 p~Vil~vG-VNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFR-AaA--------------iEQL~----~w~er----- 192 (340)
T COG0552 139 PFVILFVG-VNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFR-AAA--------------IEQLE----VWGER----- 192 (340)
T ss_pred CEEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHH-HHH--------------HHHHH----HHHHH-----
T ss_conf 67999993-4888637179999999997-89869998233478-999--------------99999----99999-----
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH---------HHHHHHC-----CCCCCCCCC
Q ss_conf 89806872487612032079999999899985128889973888889899---------9998620-----125435787
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT---------QEVLTLS-----DKVVITTSL 306 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~---------~~~L~~A-----D~vviV~~p 306 (427)
T Consensus 193 -~gv~vI~~~~G----~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 193 -LGVPVISGKEG----ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred -HCCEEECCCCC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf -59927825999----9808999999999997699999996755445736689999999998464568998428999775
Q ss_pred --CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHHHHH
Q ss_conf --7688999999999999819876753899956589875200599999984895379---------9068799999988
Q gi|254780725|r 307 --DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFGMSA 374 (427)
Q Consensus 307 --~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~~A~ 374 (427)
T Consensus 268 ttGqnal~QAk~F~eav~-------l~GiIlTKlDgtAKGG~-il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L 338 (340)
T COG0552 268 TTGQNALSQAKIFNEAVG-------LDGIILTKLDGTAKGGI-ILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDAL 338 (340)
T ss_pred CCCHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCE-EEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf 647568999999987528-------86699970246777624-350888869997998578884432006999999986