HHsearch alignment for GI: 254780725 and conserved domain: COG1492

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism].
Probab=96.13  E-value=0.03  Score=33.04  Aligned_cols=194  Identities=12%  Similarity=0.192  Sum_probs=101.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC--CCCC---C---HHHHHCC-C---CCHH
Q ss_conf             379997469887756899999999996269949999787989860334389--9878---9---8886318-4---5612
Q gi|254780725|r  162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK--DPIN---S---ISDAIYP-V---GRID  229 (427)
Q Consensus       162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~--~~~~---~---l~d~l~~-~---~rlD  229 (427)
T Consensus         2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~------PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mN   74 (486)
T COG1492           2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVA------PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMN   74 (486)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHH-CCCCCC------CCHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCC
T ss_conf             853787214776546752453488873-577547------8706543466078779968755066789873998743428


Q ss_pred             HHHHHHHHHCCCC-CEEEEECCCCCCCHHCC---------CHHHHHHHHHHHHHCCCEEEECCCCCCCHH--------HH
Q ss_conf             4337653202489-80687248761203207---------999999989998512888997388888989--------99
Q gi|254780725|r  230 KAFVSRLPVFYAE-NLSILTAPAMLSRTYDF---------DEKMIVPVLDILEQIFPLVILDVPHVWNSW--------TQ  291 (427)
Q Consensus       230 ~~~l~~~l~~~~~-gL~lL~a~~~~~~~~~~---------~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~--------~~  291 (427)
T Consensus        75 PvLLK----P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm  150 (486)
T COG1492          75 PVLLK----PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANM  150 (486)
T ss_pred             CEEEE----ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCE
T ss_conf             77870----35888447999463446657178899988999999999998754105589996379823227663661100


Q ss_pred             HHHHHCC-CCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECC
Q ss_conf             9986201-2543578776----88999999999999819876753899956589875-2005999999848953799068
Q gi|254780725|r  292 EVLTLSD-KVVITTSLDL----AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPF  365 (427)
Q Consensus       292 ~~L~~AD-~vviV~~p~~----~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~  365 (427)
T Consensus       151 ~~a~~~dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~----~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~  226 (486)
T COG1492         151 GVAEIADAPVILVGDIDRGGVFASLYGTLALLPESDRA----LVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPY  226 (486)
T ss_pred             EEEHHCCCCEEEEEEECCCCEEEEEEEHHEECCHHHHC----CEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             22023389889999511564541730212236876760----01479996317987887459999998619746756525


Q ss_pred             CHHHH
Q ss_conf             79999
Q gi|254780725|r  366 DGAVF  370 (427)
Q Consensus       366 D~~~~  370 (427)
T Consensus       227 ~~~~~  231 (486)
T COG1492         227 LKDAL  231 (486)
T ss_pred             CCCCC
T ss_conf             55455