HHsearch alignment for GI: 254780725 and conserved domain: COG2197

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.05  E-value=2.1e-08  Score=70.81  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=90.7

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             83898999999988641100202237306998999999861899849999805987677889998885328998089981
Q gi|254780725|r   34 FCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG  113 (427)
Q Consensus        34 f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig  113 (427)
T Consensus         6 vDDh~l~r~gl~~~L~~~~--~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~-~p~~~vvvlt   81 (211)
T COG2197           6 VDDHPLVREGLRQLLELEP--DLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRAR-GPDIKVVVLT   81 (211)
T ss_pred             ECCCHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEEE
T ss_conf             8097779999999998689--9669998278899999851-3799889983788998759999999986-8997299996


Q ss_pred             CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             687189999999765626431899989999976310233
Q gi|254780725|r  114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        82 ~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G  120 (211)
T COG2197          82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG  120 (211)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             778989999999779969986799999999999999758