HHsearch alignment for GI: 254780725 and conserved domain: COG2197
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.05 E-value=2.1e-08 Score=70.81 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 83898999999988641100202237306998999999861899849999805987677889998885328998089981
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
T Consensus 6 vDDh~l~r~gl~~~L~~~~--~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~-~p~~~vvvlt 81 (211)
T COG2197 6 VDDHPLVREGLRQLLELEP--DLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRAR-GPDIKVVVLT 81 (211)
T ss_pred ECCCHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 8097779999999998689--9669998278899999851-3799889983788998759999999986-8997299996
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 687189999999765626431899989999976310233
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 82 ~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 778989999999779969986799999999999999758