HHsearch alignment for GI: 254780725 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.60  E-value=1.2e-13  Score=103.15  Aligned_cols=163  Identities=16%  Similarity=0.221  Sum_probs=126.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             59998389899999998864110020223730699899999986189984999980598767788999888532899808
Q gi|254780725|r   30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV  109 (427)
Q Consensus        30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V  109 (427)
T Consensus         6 ~iLvVDDd~~ir~~l~~~L~~~G----~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~-~~~~pV   79 (464)
T COG2204           6 RILVVDDDPDIRELLEQALELAG----YEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR-DPDLPV   79 (464)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCE
T ss_conf             78999297899999999999769----7489858999999998628-99989981678999669999999963-899988


Q ss_pred             EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC---CC-----C------C-----------------
Q ss_conf             998168718999999976562643189998999997631023322---23-----4------5-----------------
Q gi|254780725|r  110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE---EG-----K------G-----------------  158 (427)
Q Consensus       110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~---~~-----~------~-----------------  158 (427)
T Consensus        80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~k  159 (464)
T COG2204          80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAK  159 (464)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99828899999999985570333218999999999999999876532221000001345567752069999999999999


Q ss_pred             --CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             --675379997469887756899999999996269949999787
Q gi|254780725|r  159 --SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD  200 (427)
Q Consensus       159 --~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD  200 (427)
T Consensus       160 vA~s~a~VLI~-GESGtGKElvAr~I-H~~S~R~~~PFVavNca  201 (464)
T COG2204         160 VAPSDASVLIT-GESGTGKELVARAI-HQASPRAKGPFIAVNCA  201 (464)
T ss_pred             HHCCCCCEEEE-CCCCCCHHHHHHHH-HHHCCCCCCCCEEEECC
T ss_conf             84779978997-78987589999999-86074458992563346