HHsearch alignment for GI: 254780725 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.60 E-value=1.2e-13 Score=103.15 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=126.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 59998389899999998864110020223730699899999986189984999980598767788999888532899808
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G----~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~-~~~~pV 79 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAG----YEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR-DPDLPV 79 (464)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCE
T ss_conf 78999297899999999999769----7489858999999998628-99989981678999669999999963-899988
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC---CC-----C------C-----------------
Q ss_conf 998168718999999976562643189998999997631023322---23-----4------5-----------------
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE---EG-----K------G----------------- 158 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~---~~-----~------~----------------- 158 (427)
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~k 159 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAK 159 (464)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99828899999999985570333218999999999999999876532221000001345567752069999999999999
Q ss_pred --CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf --675379997469887756899999999996269949999787
Q gi|254780725|r 159 --SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 159 --~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
T Consensus 160 vA~s~a~VLI~-GESGtGKElvAr~I-H~~S~R~~~PFVavNca 201 (464)
T COG2204 160 VAPSDASVLIT-GESGTGKELVARAI-HQASPRAKGPFIAVNCA 201 (464)
T ss_pred HHCCCCCEEEE-CCCCCCHHHHHHHH-HHHCCCCCCCCEEEECC
T ss_conf 84779978997-78987589999999-86074458992563346