HHsearch alignment for GI: 254780725 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].

Probab=98.63  E-value=1.9e-06  Score=58.83  Aligned_cols=119  Identities=14%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC-C
Q ss_conf             30599983898999999988641100202237-306998999999861899849999805987677889998885328-9
Q gi|254780725|r   28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCD-S  105 (427)
Q Consensus        28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~-p  105 (427)
T Consensus       132 ~~kILvvdD~~~~~~~l~~~-----L~~~g~~v~~a~~~~~Al~~~~e~-~~dlil~d~~mp~~dg~el~~~lr~~~~t~  205 (435)
T COG3706         132 PKKILVVDDDATQRERLRRI-----LQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLERTR  205 (435)
T ss_pred             CCEEEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHCCCCCC
T ss_conf             75089974807799999999-----875363366515989999997468-985899955787667899999972444445


Q ss_pred             CCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             98089981687189999999765626431899989999976310233
Q gi|254780725|r  106 GTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       106 ~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus       206 ~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~  252 (435)
T COG3706         206 DIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR  252 (435)
T ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf             66389995266347899999768851673477879999999999985