HHsearch alignment for GI: 254780725 and conserved domain: COG3707

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms].

Probab=98.08  E-value=4.7e-05  Score=50.26  Aligned_cols=80  Identities=23%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH
Q ss_conf             99999986189984999980598767788999888532899808998168718999999976562643189998999997
Q gi|254780725|r   66 AEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINS  145 (427)
Q Consensus        66 ~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~a  145 (427)
T Consensus        40 ~~~~~~~~~~-~pDvVildie~p~rd~~e~~~~~~~--~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~  116 (194)
T COG3707          40 LEAVEVCERL-QPDVVILDIEMPRRDIIEALLLASE--NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPI  116 (194)
T ss_pred             CCCCHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHC--CCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf             4750677852-9987999667877328999898605--899878999716785899999973874988347654210479


Q ss_pred             HHH
Q ss_conf             631
Q gi|254780725|r  146 ISA  148 (427)
Q Consensus       146 i~~  148 (427)
T Consensus       117 L~v  119 (194)
T COG3707         117 LDV  119 (194)
T ss_pred             HHH
T ss_conf             999