HHsearch alignment for GI: 254780725 and conserved domain: COG3947
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=98.51 E-value=4.6e-06 Score=56.45 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCEEEEECCC-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9899999998864110020223730699-899999986189984999980598767788999888532899808998168
Q gi|254780725|r 37 TDTLYSVVERSKIDPRMSQVNMRITRGS-IAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDT 115 (427)
Q Consensus 37 ~~~~~~~~~~~~~drr~~~~~~~v~~g~-~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~ 115 (427)
T Consensus 9 d~a~~~~l~~i-----Ls~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~-~~v~iifIssh 81 (361)
T COG3947 9 DAAIVKLLSVI-----LSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIE-SAVPIIFISSH 81 (361)
T ss_pred HHHHHHHHHHH-----HHHCCCHHHCCCCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 38999999999-----9861102100688788999998-43887799985237860878999998753-14868999630
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCC-CCCCCEEEEEEECC-----CCCC---HHHHHHHHHHHH
Q ss_conf 71899999997656264318999899999763102332223-45675379997469-----8877---568999999999
Q gi|254780725|r 116 NDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEG-KGSSGCSISFIGSR-----GGVG---SSTIAHNCAFSI 186 (427)
Q Consensus 116 ~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~-~~~~grvIav~g~K-----GGvG---kTTiA~nLA~~L 186 (427)
T Consensus 82 ~eya~dsf~~n--~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayL 159 (361)
T COG3947 82 AEYADDSFGMN--LDDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYL 159 (361)
T ss_pred HHHHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHHHH
T ss_conf 56523203556--6754168888889999999874024444100137046750640012347842230136799999999
Q ss_pred HHHCCCCE
Q ss_conf 96269949
Q gi|254780725|r 187 ASVFAMET 194 (427)
Q Consensus 187 A~~~~~~V 194 (427)
T Consensus 160 v~hkgk~v 167 (361)
T COG3947 160 VEHKGKEV 167 (361)
T ss_pred HHHCCCCC
T ss_conf 98248855