HHsearch alignment for GI: 254780725 and conserved domain: COG4567
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].
Probab=99.04 E-value=9e-09 Score=73.09 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=93.4
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 599983898999999988641100202237-3069989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 11 ~lllvdDD~~f~~~LaRa~-----e~RGf~v~~a~~~~eal~~art~-~PayAvvDlkL~~gsGL~~i~~lr~~-~~d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAM-----ERRGFAVVTAESVEEALAAARTA-PPAYAVVDLKLGDGSGLAVIEALRER-RADMR 83 (182)
T ss_pred EEEEECCCHHHHHHHHHHH-----HCCCCEEEEECCHHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHHHHHHC-CCCCE
T ss_conf 0589618769999999998-----60686257614499999998517-98528898640688746899999824-97643
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 899816871899999997656264318999899999763102
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
T Consensus 84 ivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 84 IVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 898845117999999998624554079777689999986027