HHsearch alignment for GI: 254780725 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.63 E-value=0.52 Score=25.36 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=58.3
Q ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH---H-C-------CCCCEEEEEECCC------CHHHHHHHHH
Q ss_conf 98999999861899849999805987677889998885---3-2-------8998089981687------1899999997
Q gi|254780725|r 64 SIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAE---V-C-------DSGTKVIVIGDTN------DVSLYRALIS 126 (427)
Q Consensus 64 ~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~---~-~-------~p~~~Vivig~~~------d~~l~r~l~r 126 (427)
T Consensus 18 sG~a~a~~L~~~G-~~V~~~D~~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p~~~~~l~~A~~ 95 (501)
T PRK02006 18 SGLAMARWCARHG-CRLRVADTREAP-PNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEPALAALLAAARE 95 (501)
T ss_pred HHHHHHHHHHHCC-CEEEEEECCCCC-CCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCCCHHHHHHHHHH
T ss_conf 8999999999789-849999899998-61999986089818977889867846899999899008888543199999998
Q ss_pred CCCCEEECCCCCHHHH-HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6562643189998999-9976310233222345675379997469887756899999999996269949999
Q gi|254780725|r 127 NHVSEYLIEPLSVADI-INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 127 ~Gv~dyl~~P~~~~~l-~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
T Consensus 96 ~gi~-i~----~eiel~~~~~~~~----~~~~~~~~~iIaVTGTn---GKTTTt~li~~iL~~-~g~~~~~~ 154 (501)
T PRK02006 96 RGIP-VW----GELELFAQALAAL----GASRGYAPKVLAITGTN---GKTTTTSLTGLLCER-AGKKVAVA 154 (501)
T ss_pred CCCC-EE----EHHHHHHHHHHHC----CCCCCCCCCEEEEECCC---CHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 7995-87----6899999887630----22235687489993899---668799999999997-69974652