HHsearch alignment for GI: 254780725 and conserved domain: PRK05636

>PRK05636 replicative DNA helicase; Provisional.
Probab=97.03  E-value=0.0034  Score=38.80  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=59.3

Q ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             7537999746988775689999999999626994999978798986033-438998789888631845612433765320
Q gi|254780725|r  160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRLPV  238 (427)
Q Consensus       160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~  238 (427)
T Consensus       266 ~G~-LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir--~g~l~~~~~~~l~~  342 (507)
T PRK05636        266 GGQ-MIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAEAEVRLADMR--GGKMDEDAWEKLVQ  342 (507)
T ss_pred             CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHH--CCCCCHHHHHHHHH
T ss_conf             356-799973787866899999999999876993799715699899999999984798878885--58878899999999


Q ss_pred             CCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC--CCEEEECC
Q ss_conf             248--980687248761203207999999989998512--88899738
Q gi|254780725|r  239 FYA--ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI--FPLVILDV  282 (427)
Q Consensus       239 ~~~--~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~--yd~VIiD~  282 (427)
T Consensus       343 a~~~l~~~pl-----~IdD~~~lti~~Ira~aRrlk~~~~l~livVDY  385 (507)
T PRK05636        343 RLGKIAQAPI-----FIDDSANLTMMEIRSKARRLKQKHDLKMIVVDY  385 (507)
T ss_pred             HHHHHHHCCE-----EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf             9999861988-----998499976999999999998617999899845