HHsearch alignment for GI: 254780725 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=97.03 E-value=0.0034 Score=38.80 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7537999746988775689999999999626994999978798986033-438998789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
T Consensus 266 ~G~-LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir--~g~l~~~~~~~l~~ 342 (507)
T PRK05636 266 GGQ-MIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAEAEVRLADMR--GGKMDEDAWEKLVQ 342 (507)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHH--CCCCCHHHHHHHHH
T ss_conf 356-799973787866899999999999876993799715699899999999984798878885--58878899999999
Q ss_pred CCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC--CCEEEECC
Q ss_conf 248--980687248761203207999999989998512--88899738
Q gi|254780725|r 239 FYA--ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI--FPLVILDV 282 (427)
Q Consensus 239 ~~~--~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~--yd~VIiD~ 282 (427)
T Consensus 343 a~~~l~~~pl-----~IdD~~~lti~~Ira~aRrlk~~~~l~livVDY 385 (507)
T PRK05636 343 RLGKIAQAPI-----FIDDSANLTMMEIRSKARRLKQKHDLKMIVVDY 385 (507)
T ss_pred HHHHHHHCCE-----EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 9999861988-----998499976999999999998617999899845