HHsearch alignment for GI: 254780725 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.42 E-value=1.7e-05 Score=52.89 Aligned_cols=242 Identities=12% Similarity=0.068 Sum_probs=127.4
Q ss_pred HHHHHHHHHCCCCEEEC--------CCCCHHH----HHHHHHHCCCC--CCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 89999999765626431--------8999899----99976310233--2223456753799974698877568999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLI--------EPLSVAD----IINSISAIFTP--QEEGKGSSGCSISFIGSRGGVGSSTIAHNCA 183 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~--------~P~~~~~----l~~ai~~~~~~--~~~~~~~~grvIav~g~KGGvGkTTiA~nLA 183 (427)
T Consensus 119 ~~l~~~L~~~g~~~~la~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ggV~alVG-PTGVGKTTTiAKLA 197 (404)
T PRK06995 119 GALFRHLLAAGFSAQLVRMLLENLPAGDDAQAAMDWARSVLASNLPVLGSEDALMERGGVFALVG-PTGVGKTTTTAKLA 197 (404)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEC-CCCCCHHHHHHHHH
T ss_conf 99999999879999999999984703389789999999999974666666531011475589866-88876375899999
Q ss_pred HHHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHH
Q ss_conf 99996269-94999978798986033438998789888631845612433765320248980687248761203207999
Q gi|254780725|r 184 FSIASVFA-METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEK 262 (427)
Q Consensus 184 ~~LA~~~~-~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~ 262 (427)
T Consensus 198 Ar~~l~~g~~kVaLIT~DTYRIgAvEQL-----------------------ktYa~I--lgvPv~v---------v~~~~ 243 (404)
T PRK06995 198 ARCVMRHGASKVALLTTDSYRIGGHEQL-----------------------RIYGKI--LGVPVHA---------VKDAA 243 (404)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHH-----------------------HHHHHH--CCCEEEE---------ECCHH
T ss_conf 9999983898379997687547899999-----------------------999987--5955999---------59999
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCC--CHHH---HHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 999989998512888997388888--9899---9998620---1254357877688999999999999819876753899
Q gi|254780725|r 263 MIVPVLDILEQIFPLVILDVPHVW--NSWT---QEVLTLS---DKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLV 334 (427)
Q Consensus 263 ~l~~ll~~l~~~yd~VIiD~p~~~--~~~~---~~~L~~A---D~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iV 334 (427)
T Consensus 244 eL~~aL~~l~-~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~-~~~dl~~i~~~f~~~~~----~~~I 317 (404)
T PRK06995 244 DLRLALAELR-NKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATS-HGDTLNEVVQAYRGPGL----AGCI 317 (404)
T ss_pred HHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHHCCCCC----CEEE
T ss_conf 9999999708-9999998099989768889999999973578852899977989-99999999998446999----8399
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCH------HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 9565898752005999999848953799-----06879------999998847961898889998999999999998522
Q gi|254780725|r 335 LNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDG------AVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGR 403 (427)
Q Consensus 335 lNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~------~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~gr 403 (427)
T Consensus 318 ~TKLDEt~~~G-~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
T PRK06995 318 LTKLDEAASLG-GALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPR---EGSPFVPQDDEMPLLLAALAAR 393 (404)
T ss_pred EECCCCCCCHH-HHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHCC
T ss_conf 83040679723-9999999978985998189958421210898999999862645---5899998800799999876414
Q ss_pred C
Q ss_conf 1
Q gi|254780725|r 404 V 404 (427)
Q Consensus 404 ~ 404 (427)
T Consensus 394 ~ 394 (404)
T PRK06995 394 S 394 (404)
T ss_pred C
T ss_conf 6