HHsearch alignment for GI: 254780725 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=94.19 E-value=0.28 Score=26.99 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=66.6
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCE--------
Q ss_conf 306998999999861899849999805987677889998885328998089981687189999999765626--------
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSE-------- 131 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~d-------- 131 (427)
T Consensus 19 LkL~~~~~~~~~~~~~a~~---------~~~s~~e~L~~Lle~E--------~~~R~~rr~~rrlk~A~fp~~ktLe~fD 81 (269)
T PRK08181 19 LRLPTIKTLWPQFAEQADK---------EGWPAARFLAAIAEHE--------IAERARRRIERHLAEAHLPPGKTLDSFD 81 (269)
T ss_pred CCCHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 6852899999999999987---------5999999999999999--------9999999999999868979988865478
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 431899989999976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 132 YLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 132 yl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
T Consensus 82 f~~~p~i~~~~i~~L~~~-----~~fi~~~~Nvil~G-p~GtGKThLA~Alg~~A~~-~G~~V~f~~~~ 143 (269)
T PRK08181 82 FEAVPMISKAQVMALAAG-----DSWLAKGANLLLFG-PPGGGKSHLAAAIGLALIE-NGWRVLFTRTT 143 (269)
T ss_pred CCCCCCCCHHHHHHHHCC-----CHHHHCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_conf 556899899999999656-----75886487089989-9998788999999999998-79939997899