HHsearch alignment for GI: 254780725 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=93.24 E-value=0.38 Score=26.25 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999976562643189998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 121 ~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
T Consensus 119 pk~i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~--~~~~~kGlyl~G-~~G~GKTyL~~aian~La~-~g~~v~~v~~ 193 (306)
T PRK08939 119 PKDLLQATLADIDLDDLDRLDALMAALDFLEAYK--PGEKVKGLYLYG-DFGVGKTYLLAAIANELAK-KGVSSTLVHF 193 (306)
T ss_pred CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEH
T ss_conf 7999809898648897789999999999999737--698887788989-9999899999999999998-6992999875