HHsearch alignment for GI: 254780725 and conserved domain: PRK09390

>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.37  E-value=1.6e-11  Score=90.06  Aligned_cols=117  Identities=14%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             305999838989999999886411002022373-0699899999986189984999980598767788999888532899
Q gi|254780725|r   28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG  106 (427)
Q Consensus        28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~  106 (427)
T Consensus         3 k~tIliVDDh~~vr~gl~~lL~-----~~~~~v~~~~~~~~~l~~~~~~-~pdlvllDi~mP~~~G~e~l~~l~~~-~p~   75 (202)
T PRK09390          3 KGVVHVVDDDEAMRDSLAFLLD-----SAGFEVRLFESAQAFLDALPGL-RFGCVVTDVRMPGIDGIELLRRLKAR-GSP   75 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHHHC-CCC
T ss_conf             9979998499999999999999-----8899899989999999997657-97999877999998960799998722-899


Q ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf             808998168718999999976562643189998999997631023
Q gi|254780725|r  107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT  151 (427)
Q Consensus       107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~  151 (427)
T Consensus        76 ~~vivlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~  120 (202)
T PRK09390         76 LPVIVMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALA  120 (202)
T ss_pred             CCEEEEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             867999745748888999982946445599999999999999997