HHsearch alignment for GI: 254780725 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.37 E-value=1.6e-11 Score=90.06 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=92.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 305999838989999999886411002022373-0699899999986189984999980598767788999888532899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~ 106 (427)
T Consensus 3 k~tIliVDDh~~vr~gl~~lL~-----~~~~~v~~~~~~~~~l~~~~~~-~pdlvllDi~mP~~~G~e~l~~l~~~-~p~ 75 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLD-----SAGFEVRLFESAQAFLDALPGL-RFGCVVTDVRMPGIDGIELLRRLKAR-GSP 75 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHHHC-CCC
T ss_conf 9979998499999999999999-----8899899989999999997657-97999877999998960799998722-899
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 808998168718999999976562643189998999997631023
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 76 ~~vivlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~ 120 (202)
T PRK09390 76 LPVIVMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 867999745748888999982946445599999999999999997