HHsearch alignment for GI: 254780725 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=98.32 E-value=4.3e-05 Score=50.45 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=98.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986-03343899878988863184561243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGT-ANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~-~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
T Consensus 47 g~a~~iGiTG-~pG~GKStli~~l~~~~~~-~g~~v~vlavDPsS~~sgGaiLG------------Dr~Rm~~~------ 106 (325)
T PRK09435 47 GNALRIGITG-VPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILG------------DKTRMERL------ 106 (325)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCHHH------------HHHHHHHH------
T ss_conf 9825997427-9998688999999999996-79858999978999988861010------------38888761------
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHH
Q ss_conf 02489806872487612032079999999899985-12888997388888989999986201254357877688-99999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAG-LRNSK 315 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~s-lr~a~ 315 (427)
T Consensus 107 -~~~~~~fiRs~~sr-g~lgg~~~~-~~~~~~~~~a~g~d~i~iETv-GvGQ~e~~v~~~~d~~~~~~~p~~GD~~Q~~K 182 (325)
T PRK09435 107 -SRHPNAFIRPSPSS-GTLGGVARK-TRETMLLCEAAGFDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAGDELQGIK 182 (325)
T ss_pred -CCCCCEEEEECCCC-CCCCCCCHH-HHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCEEEEEECCCCCCHHHHHH
T ss_conf -47998488406778-886773354-999999999779998999706-77714889987426688883588760889988
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCC--CHHHHHHHHHHHCC
Q ss_conf 9999999819876753899956589875--20059999998489
Q gi|254780725|r 316 NLIDVLKKLRPADKPPYLVLNQVKTPKK--PEISISDFCAPLGI 357 (427)
Q Consensus 316 ~ll~~l~~~~~~~~~~~iVlNr~~~~~~--~~i~~~~~~~~lg~ 357 (427)
T Consensus 183 ~GI-----mEiaD---i~vVNKaDgd~~~~A~~t~~e~~~aL~l 218 (325)
T PRK09435 183 KGI-----MELAD---LIVINKADGDNHTAARRAAAEYRSALRL 218 (325)
T ss_pred HHH-----HHHCC---EEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 657-----75042---6899776755658999999999999860