HHsearch alignment for GI: 254780725 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.24 E-value=4.5e-10 Score=81.12 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=97.4
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~--~~~~~vv~~a~~~~~~~~~l~~~~-~DvvllD~~lp~~~g~~~i~~i~~~-~p~~~ 79 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQK--NSNIQVVLKTDDSRITIDYLRTYP-VDLVILDIELPGTDGFTLLKRIKQI-QETVK 79 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCC-CCEEEECCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf 8899985969999999999962--989289999899999999997479-9999988999998864056789873-89970
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 80 ilvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~ 122 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS 122 (210)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 8997176729999999966877688678999999999999985