HHsearch alignment for GI: 254780725 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.24  E-value=4.5e-10  Score=81.12  Aligned_cols=119  Identities=13%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r   29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK  108 (427)
Q Consensus        29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~  108 (427)
T Consensus         4 ~~VlIvDDh~l~r~gl~~~l~~--~~~~~vv~~a~~~~~~~~~l~~~~-~DvvllD~~lp~~~g~~~i~~i~~~-~p~~~   79 (210)
T PRK09935          4 ASVIIMDEHPIVRMSIEVLLQK--NSNIQVVLKTDDSRITIDYLRTYP-VDLVILDIELPGTDGFTLLKRIKQI-QETVK   79 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCC-CCEEEECCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf             8899985969999999999962--989289999899999999997479-9999988999998864056789873-89970


Q ss_pred             EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf             8998168718999999976562643189998999997631023
Q gi|254780725|r  109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT  151 (427)
Q Consensus       109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~  151 (427)
T Consensus        80 ilvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~  122 (210)
T PRK09935         80 VLFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS  122 (210)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             8997176729999999966877688678999999999999985