HHsearch alignment for GI: 254780725 and conserved domain: PRK10046
>PRK10046 dpiA two-component response regulator DpiA; Provisional.
Probab=99.55 E-value=4.3e-13 Score=99.67 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=95.9
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~--~~~gf~~V~~A~~~~eA~~~l~~~-~pDLvLLDi~LPd~~Glell~~lr~~-~~~~~ 80 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIR--HIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYLPDGRGINLLHELVQA-HYPGD 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCC
T ss_conf 869999598999999999997--289954999989999999999735-99999982898999799999999964-87998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 8999689999999999974998310289999999999999999