HHsearch alignment for GI: 254780725 and conserved domain: PRK10046

>PRK10046 dpiA two-component response regulator DpiA; Provisional.
Probab=99.55  E-value=4.3e-13  Score=99.67  Aligned_cols=119  Identities=13%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r   29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK  108 (427)
Q Consensus        29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~  108 (427)
T Consensus         5 i~VLIVEDd~~v~~~l~~~L~--~~~gf~~V~~A~~~~eA~~~l~~~-~pDLvLLDi~LPd~~Glell~~lr~~-~~~~~   80 (225)
T PRK10046          5 LTLLIVEDETPLAEMHAEYIR--HIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYLPDGRGINLLHELVQA-HYPGD   80 (225)
T ss_pred             CEEEEEECCHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCC
T ss_conf             869999598999999999997--289954999989999999999735-99999982898999799999999964-87998


Q ss_pred             EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf             8998168718999999976562643189998999997631023
Q gi|254780725|r  109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT  151 (427)
Q Consensus       109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~  151 (427)
T Consensus        81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~  123 (225)
T PRK10046         81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ  123 (225)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf             8999689999999999974998310289999999999999999