HHsearch alignment for GI: 254780725 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.48 E-value=2.3e-12 Score=95.20 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=90.2
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 3898999999988641100202237306998999999861-899849999805987677889998885328998089981
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSD-SSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~-~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
T Consensus 7 VEDD~~v~~~~~~~l~-~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~-~~~~~VI~IT 84 (239)
T PRK10430 7 VDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-GCKSDVIVIS 84 (239)
T ss_pred EECCHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 9298999999999985-1899089999899999999996579998589978999999789999999985-8998199997
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 687189999999765626431899989999976310
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
T Consensus 85 a~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y 120 (239)
T PRK10430 85 SAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred ECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHH
T ss_conf 268899999999839503048999999999999999