HHsearch alignment for GI: 254780725 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.11 E-value=6.9e-09 Score=73.83 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=93.1
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHCC
Q ss_conf 30599983898999999988641100202237306998999999861899849999805987---677889998885328
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDS---REVLSALEPLAEVCD 104 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~---~~~~~~l~~la~~~~ 104 (427)
T Consensus 3 ~irIlIvDDh~lvr~Gl~~~L~~--~~~~~vvg~a~~~~~~~~~~~~~-~pDvvllDl~mpg~~~~dGl~~~~~i~~~-~ 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQ--IEWVNVVGEFEDSTALINNLPKL-DAHVLITDLSMPGDKYGDGITLIKYIKRH-F 78 (216)
T ss_pred CCEEEEECCHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHHHHHHHHHH-C
T ss_conf 88899988979999999999815--99968999879999999998623-98989982677999887899999999985-8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99808998168718999999976562643189998999997631023
Q gi|254780725|r 105 SGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 105 p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 79 p~~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99808998477878999999858974899878999999999999987